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Mycobacterium tuberculosis complex lineage 5 exhibits high levels of within-lineage genomic diversity and differing gene content compared to the type strain H37Rv 
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Gene content difference between the M. tuberculosis H37Rv (L4) genome and the complete (PacBio-sequenced) genomes of three <t> L5 </t> strains from Benin, The Gambia and Nigeria
Mycobacterium tuberculosis complex lineage 5 exhibits high levels of within-lineage genomic diversity and differing gene content compared to the type strain H37Rv 
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Genes in the L5.3.2-Del region (PcbL5Nig-Del) and their function category. None of the 30 genes is an essential gene (Mycobrowser). The 30 genes formed 2 regions: Rv1493 through Rv1509 (L5.3.2-Del region 1) and Rv1511 through Rv1521 (L5.3.2-Del region 2), separated by the gene Rv1510 , which is present in the L5.3.2 isolate. All genes in the table are absent from all L5.3.2 genomes (both PacBio- and Illumina-sequenced), except those marked with an asterisk (*), which are present in the <t> PacBio-sequenced </t> genome (PcbL5Nig) but absent in all six Illumina-sequenced genomes, and the one marked with a hash ( # ) (Rv1492), which is a gene present in all L5.3.2 strains and flanking the <t> L5.3.2-specific </t> deletion
Mycobacterium tuberculosis complex lineage 5 exhibits high levels of within-lineage genomic diversity and differing gene content compared to the type strain H37Rv 
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Phylogenetic tree showing the Illumina-sequenced genomes of the <t>six</t> <t>L5</t> strains (L5.3.2) similar to the complete <t>(PacBio-sequenced)</t> genome of the Nigerian L5 strain (PcbL5Nig) and the position of the other two PacBio-sequenced L5 genomes (PcbL5Ben and PcbL5Gam). NigDel=L5Nig-Del=L5.3.2-Del=region of 30 genes (2 blocks of 19 and 11 genes: Rv1493 through Rv1509 and Rv1511 through Rv1521 ) missing in L5.3.2 strains but present in all other L5 strains (L5.1, L5.2, L5.3.1 and new sub-lineages).
Mycobacterium tuberculosis complex lineage 5 exhibits high levels of within-lineage genomic diversity and differing gene content compared to the type strain H37Rv Microbial Genomics, 2022 Dec 14
"Gene content difference between the M. tuberculosis H37Rv (L4) genome and the complete (PacBio-sequenced) genomes of three <t> L5 </t> strains from Benin, The Gambia and Nigeria"
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